NO01G00400.1, NO01G00400.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G00400.1
Unique NameNO01G00400.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2120
Alignment locationchr1:105393..109362 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:105393..109362 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G00400.1 vs.
Match: XP_009035069.1 (hypothetical protein AURANDRAFT_23064 [Aureococcus anophagefferens]; EGB10254.1 hypothetical protein AURANDRAFT_23064 [Aureococcus anophagefferens])

HSP 1 Score: 481.1 bits (1237), Expect = 3.600e-132
Identity = 207/295 (70.17%), Postives = 249/295 (84.41%), Query Frame = 0 
Query:   64 VDRLLEQLLSVKEARPGTEVNLAEEDIFWLCLQCRKTFLSQPMLLEVQCPVNICGDTHGQYHDVLRLFEMGHFPPYSNYIFLGDYVDRAKQSIETMCLLMCYKIKYPESFFLLRGNHECASLNRIYGFYDECKRRYSVKLWRTFSDLFNCMPVAAVIEEKILCMHGGLSPELHHLSQILNLPRPVDIPDEGILCDLLWSDPDPSLVGWARNPRGVSYLFGHDVVEDFLASHDLDLICRAHQVVEDGYEFQASRQLVTLFSAPNYCGEFDNAGAMMCINEDLICSFRVLRPALHQR 359
            +D  + +L+ VK+ +PGTEVNLAE+++ W+    R  FL QPMLLE+  P+NICGDTHGQYHD+LRLFEMG FPP SNY+FLGDYVDRAKQSIET+ LL+C+KIKYP++FFLLRGNHEC++LNRIYGF+DECKRRY+VKLWR F D FNCMPVAAV+ +KI+ MHGGLSPEL  L QI  + RP ++P++G+LCDLLWSDPDP ++GW  N RGVSY FGH+V+ DFL  HDLD++CRAHQVVEDGYEFQA+R LVT+FSAPNYCGEFDNAG MMCI  DL CSF+VLRP   +R
Sbjct:   12 LDSCIARLVGVKDDKPGTEVNLAEDELMWIARTARAVFLEQPMLLELNAPINICGDTHGQYHDLLRLFEMGGFPPASNYVFLGDYVDRAKQSIETIGLLLCFKIKYPKTFFLLRGNHECSALNRIYGFFDECKRRYTVKLWRVFGDCFNCMPVAAVVADKIIAMHGGLSPELTSLEQIARIERPTEVPEDGLLCDLLWSDPDPMIMGWGYNTRGVSYTFGHEVIRDFLKQHDLDVVCRAHQVVEDGYEFQAARGLVTIFSAPNYCGEFDNAGGMMCIGADLCCSFKVLRPMTQKR 306
The following BLAST results are available for this feature:
BLAST of NO01G00400.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_009035069.13.600e-13270.17hypothetical protein AURANDRAFT_23064 [Aureococcus... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G00400NO01G00400Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G00400.1NO01G00400.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G00400.1.cds1NO01G00400.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G00400.1.cds2NO01G00400.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G00400.1.cds3NO01G00400.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G00400.1.cds4NO01G00400.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G00400.1.cds5NO01G00400.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G00400.1.cds6NO01G00400.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G00400.1.cds7NO01G00400.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G00400.1.cds8NO01G00400.1.cds8Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G00400.1.cds9NO01G00400.1.cds9Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G00400.1.cds10NO01G00400.1.cds10Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G00400.1 ID=NO01G00400.1|Name=NO01G00400.1|organism=Nannochloropsis oceanica|type=mRNA|length=2120bp
CACAGGCGATTTGACCCAAGTATAAAAACAGTAATGCGTGCGCTCTGGGC
CTCTCGTGCCGTAGCTTGTCCCAAACGAGGCCTACAAAAACACGATAGCA
CGAAGAACACGACACGTACGCGTCGACAAATGCACTTACTTCGGAGCAAG
GAGCGGGGCTTAAGCTCGTTTGGTGCTGCCCTTTTCCTTTTATACATGCC
CTTCTCGTCCACACCGTGCGCCCATCAACAGCTACTCACTACACTGCTGC
TTTTTACAAGCAGCAACCGCAAGCATCAATCCTGAAGCAAGCCTCCGATC
AGAGTCCCATGCGAGACGTTGGATCTCTCCACCTCCTCCACTTTCTGCCC
CAATATCAAAGCACGACAGCGAATGCGTGAAGCGGTAATAGACCGCATGC
TCCTATAAACTCTTCACCCACGTACATGCCAAATATGCTACACACACAGA
GGAAGGCGATAGAGGTGTGCGTGGGGCCTGTGGCGGCGTCATTTCTCCTC
TCTAGGTCTGGTCGAATCCGTCGGTCGGGCGGAGAAGGCAAGGGGAGGCG
AGAGCACCGGGATCGATCTAACGCCATCTCCTGCCTTGTTCTTCCCGCTG
TGTTCCCAGCACTCCATGTTGTCCACCACCAAAACAGCCACGACTATCAA
CAGTAACAGTACCAGCACCGGCAGTGGCAATAGTATGTCGTCTTCCTCCG
CTGCCTCCTTTCCCACCATGGAGGCCACCCTCCCCCTCCCCCTCCCTTCG
ACTTGTCCCCCGGCCCCTCCCGGTCCTCGCGTGGCGACCATCGAAGCCGA
AATTGTGGACCGTCTTCTGGAGCAGCTCTTGTCCGTCAAGGAGGCAAGAC
CAGGCACCGAGGTTAATTTGGCAGAGGAAGACATTTTCTGGCTCTGCCTA
CAGTGCCGCAAGACCTTTCTCTCCCAGCCCATGCTTCTCGAGGTGCAATG
CCCCGTTAACATTTGCGGCGACACCCACGGACAGTACCACGACGTTCTCC
GTCTCTTCGAAATGGGCCACTTCCCGCCCTACAGCAACTACATATTCCTA
GGCGACTATGTGGATCGAGCGAAGCAGAGCATCGAAACCATGTGCCTCCT
CATGTGCTACAAGATCAAATACCCGGAGTCCTTTTTCCTCCTTCGCGGCA
ATCATGAGTGTGCATCGCTCAACCGCATCTACGGCTTCTACGACGAGTGC
AAACGACGGTATTCAGTCAAGCTATGGCGCACTTTTTCCGACCTCTTCAA
CTGCATGCCCGTGGCGGCCGTCATCGAGGAGAAGATTCTATGTATGCACG
GAGGTCTGTCACCAGAGCTGCACCACCTGTCGCAGATACTGAATTTGCCC
CGTCCTGTCGACATTCCTGACGAAGGCATCCTCTGCGACCTACTCTGGTC
GGACCCCGATCCCTCTCTCGTCGGCTGGGCGCGTAATCCCCGCGGCGTCT
CCTACCTCTTTGGACACGACGTAGTGGAGGATTTCTTGGCTTCGCATGAT
TTAGACTTGATCTGTCGGGCGCATCAGGTGGTAGAAGACGGCTACGAATT
CCAAGCCTCAAGACAGCTCGTCACACTATTTTCCGCGCCTAATTACTGTG
GTGAGTTTGACAATGCCGGGGCTATGATGTGCATTAATGAAGACTTAATC
TGCTCCTTCCGAGTTCTGAGACCGGCACTACACCAGAGAGGGAAGAAGCG
GGAGGGGGGATGGGGGAGGAGGAGGAGGACGGGGAGAATGACGAGGATGA
TGCGCTCTTTCCAACGATGGGTGACGATGATGATGATGGAAGAAGGAGGG
GCTTCTGAGGAAGGGAGGTGGAGATGGCGAGGATGGTTGAAGGGGGAGAG
GGAGGAGGAGGAGTTGGAGAAAGAGGGAGGAAGGGAGGGAGGGAGAGACG
GAGGGAGGGATATGTAATATATACCTTTTGGCTCGAGAGCACGGGTGTGT
GTGCAAAACAGCGAGGAGCAGGAGGTCGAGCAGGAGGACAAAAAAGAGGG
AGGAGGGAGAAGGAGGAGAGAATGAGAATGTGCAATGTAATATTACTGTT
AAGGACAACGAAGCCGACACGGTTGGTAAAGACGGAAGATGAAGAAGAAG
AAGAAGATGAAGAAGGAGGA
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protein sequence of NO01G00400.1

>NO01G00400.1-protein ID=NO01G00400.1-protein|Name=NO01G00400.1|organism=Nannochloropsis oceanica|type=polypeptide|length=434bp
MLSTTKTATTINSNSTSTGSGNSMSSSSAASFPTMEATLPLPLPSTCPPA
PPGPRVATIEAEIVDRLLEQLLSVKEARPGTEVNLAEEDIFWLCLQCRKT
FLSQPMLLEVQCPVNICGDTHGQYHDVLRLFEMGHFPPYSNYIFLGDYVD
RAKQSIETMCLLMCYKIKYPESFFLLRGNHECASLNRIYGFYDECKRRYS
VKLWRTFSDLFNCMPVAAVIEEKILCMHGGLSPELHHLSQILNLPRPVDI
PDEGILCDLLWSDPDPSLVGWARNPRGVSYLFGHDVVEDFLASHDLDLIC
RAHQVVEDGYEFQASRQLVTLFSAPNYCGEFDNAGAMMCINEDLICSFRV
LRPALHQRGKKREGGWGRRRRTGRMTRMMRSFQRWVTMMMMEEGGASEEG
RWRWRGWLKGEREEEELEKEGGREGGRDGGRDM*
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mRNA from alignment at chr1:105393..109362-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G00400.1 ID=NO01G00400.1|Name=NO01G00400.1|organism=Nannochloropsis oceanica|type=mRNA|length=3970bp|location=Sequence derived from alignment at chr1:105393..109362- (Nannochloropsis oceanica)
CACAGGCGATTTGACCCAAGTATAAAAACAGTAATGCGTGCGCTCTGGGC
CTCTCGTGCCGTAGCTTGTCCCAAACGAGGCCTACAAAAACACGATAGCA
CGAAGAACACGACACGTACGCGTCGACAAATGCACTTACTTCGGAGCAAG
GAGCGGGGCTTAAGCTCGTTTGGTGCTGCCCTTTTCCTTTTATACATGCC
CTTCTCGTCCACACCGTGCGCCCATCAACAGCTACTCACTACACTGCTGC
TTTTTACAAGCAGCAACCGCAAGCATCAATCCTGAAGCAAGCCTCCGATC
AGAGTCCCATGCGAGACGTTGGATCTCTCCACCTCCTCCACTTTCTGCCC
CAATATCAAAGCACGACAGCGAATGCGTGAAGCGGTAATAGACCGCATGC
TCCTATAAACTCTTCACCCACGTACATGCCAAATATGCTACACACACAGA
GGAAGGCGATAGAGGTGTGCGTGGGGCCTGTGGCGGCGTCATTTCTCCTC
TCTAGGTCTGGTCGAATCCGTCGGTCGGGCGGAGAAGGCAAGGGGAGGCG
AGAGCACCGGGATCGATCTAACGCCATCTCCTGCCTTGTTCTTCCCGCTG
TGTTCCCAGCACTCCATGTTGTCCACCACCAAAACAGCCACGACTATCAA
CAGTAACAGTACCAGCACCGGCAGTGGCAATAGTATGTCGTCTTCCTCCG
CTGCCTCCTTTCCCACCATGGAGGCCACCCTCCCCCTCCCCCTCCCTTCG
ACTTGTCCCCCGGCCCCTCCCGGTCCTCGCGTGGCGACCATCGAAGCCGA
AATTGTGGACCGTCTTCTGGAGCAGCTCTTGTCCGTCAAGGAGGCAAGAC
CAGGCACCGAGGTTAATTTGGCAGAGGAAGACATTTTCTGGCTCTGCCTA
CAGTGCCGCAAGGTAATGGAAAGGAGAAGGGAGTGGGGGAGGGAGGGGTT
TACAGGCAGACAGACCCCTGAAGGCTCTCTCTTCTGAATGGAAAAATGAG
CTATATCGTCGTGAAACACCCATTCGTGCTCAGTCCTCCCTACTCCCCGA
CCCAAACTCTTTACCCTCCCCCTCTAGACCTTTCTCTCCCAGCCCATGCT
TCTCGAGGTGCAATGCCCCGTTAACATTTGCGGCGACACCCACGGACAGG
TAGGTGCACGGCACATACCACAGGAGGAGAGAGTGACGGACCGAGGGAGG
GACCAAGGGACAGAGGGGGGGAGGAATGGCTATGTTTGAAAGCGAAGAAA
ATGCCCCCTCCGATCATAAGTGGACTCATCCCTCCTTTCCTCCCTCCTTT
CCTCCCTACCTCCCTCACTGGCAGTACCACGACGTTCTCCGTCTCTTCGA
AATGGGCCACTTCCCGCCCTACAGCAACTACATATTCCTAGGTACGAGGG
AGGGAGGGAGGGGGGGGGAGAGGGAAGGGGGAGCCAACTGCGTCAGCGCA
GATGCTCACCTATTTTCTTATCTTCCTCCCTCCCTCCCTCCCTTCCTCCC
TTCCTTTCTCTCCCTCCCTCTTCTCTTCCCTCTTTCTCTCCAGGCGACTA
TGTGGATCGAGCGAAGCAGAGCATCGAAACCATGTGCCTCCTCATGTGCT
ACAAGATCAAGTACGTCTCCCTCCCTCCTTCCCTCCCTTCCTCCCTCCAC
TCCTCCCCTCTTTCGTCCTCCGCTTGACTCACGCAACGCTCTTTATCATA
CCCTCCCTCCCTCCCCCTCCAGATACCCGGAGTCCTTTTTCCTCCTTCGC
GGCAATCATGAGTGTGCATCGCTCAACCGCATCTACGGCTTCTACGACGA
GTGCAAACGACGGTGAGGGAGGGAAGGAAGGAGGGAGGGGGGGAAGAATT
AAAGTTCTGACAAGGACGAGCCCACCACTGGAGCCTTTTGAATGAAGAGG
AAAGAGCATTCACCCTCCCTCCCTCCCTTTCTCCCTCCCTCCCTCCCTCC
AGGTATTCAGTCAAGCTATGGCGCACTTTTTCCGACCTCTTCAACTGCAT
GCCCGTGGCGGCCGTCATCGAGGAGAAGATTCTATGTATGCACGGAGGTC
TGTCACCAGAGCTGCACCACCTGTCGCAGGTAGGTAGGGAAACATGCCCT
CCCTCCCTCCCTCCTTCCCCCCTTCCTTTCTTGGGCGCGTGTGCGGGAGT
TCTAGGAGTAGGGAGGGGATGGATGTGAGGGGAGGAGAGAGGGAGGGAGG
GAGAGAGGGAGGGAGGGAGGGAAGAAGAGAGGGAGGGAGGGAGGGAGGGA
GGGGCGTCAATGGACCCTCGTCTAGGCCATCTTTCTATCCACAGACATAT
ATATAGGAATATACACATGCCATATGACCTCGATGCCTAAAAACATCAAC
TCCAGGCATACCCACACTAACGCCCTCTTTCCGCATAAATGTCACCTCTC
TTTCCGACCGACGTGAACAGATACTGAATTTGCCCCGTCCTGTCGACATT
CCTGACGAAGGCATCCTCTGCGACCTACTCTGGTGCGTCTTTCCTTTCCT
CCCTCCCTCCCTCTGTCTCCCTCTTGCTTTTCCCTCTTCAGGTCTGATCC
AGACAAGTCTGTGAATGACTAGACGCTCCATCCACCGACGCCAGCCCGCT
TCCATTTCGACTAATCTCCCTCCCCCCCTCCCTCCCTCCCCCCCTCCCTC
CCCCTCAGGTCGGACCCCGATCCCTCTCTCGTCGGCTGGGCGCGTAATCC
CCGCGGCGTCTCCTACCTCTTTGGACACGACGTAGTGGAGGATTTCTTGG
CTTCGCATGATTTAGACTTGATCTGTCGGGCGCATCAGGTGCACAAGCCT
TCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCGGCCATTTCTTTCCTC
CCTTTTTCCTCCTTCCTGTCTTATCCCCTTCCATATCTTCCACCTTCCCT
CCCTCCTTCCCCTTCCCTCTCACACATACTTATTCCTCTTCTCCTAATGT
ACATATACAATAGATATACATATACATATACATATACATACATATACATA
TATATATATTCGTTTTCTCTTCCCTCCCTCGCATATATGTATATATATAT
ATATGTGTGTGTGTATGTGTATACTCGTCCTCTCCTCCCTCTCTCACACA
CTCAATCCTCTTCTATATCTGTATATCTGTATATCTGTATGGATGCACAC
ATTGTATATTCGTTTTCTTTTCCCTCTCTCACCTACTTATTCTTCTTCCA
CACACATATTATGTATTCCTTTTCTCTCCAACCCAGGTGGTAGAAGACGG
CTACGAATTCCAAGCCTCAAGACAGCTCGTCACACTATTTTCCGCGGTTC
GTTCCGCCCCGTCCTCCCTCCCTCCCTCCCTCCTTCCCTCCCTCCCTCTT
TCCCTCCCTCCCTCCCTCCTTTCTTCCATTCCTGACTCCTCCTGGCGCTC
AACCCCTCTCTTTCTCCCCCTCTTTTCCTCCCTCCAGCCTAATTACTGTG
GTGAGTTTGACAATGCCGGGGCTATGATGTGCATTAATGAAGACTTAATC
TGCTCCTTCCGAGTTCTGAGACCGGCACTACACCAGAGAGGGAAGAAGCG
GGAGGGGGGATGGGGGAGGAGGAGGAGGACGGGGAGAATGACGAGGATGA
TGCGCTCTTTCCAACGATGGGTGACGATGATGATGATGGAAGAAGGAGGG
GCTTCTGAGGAAGGGAGGTGGAGATGGCGAGGATGGTTGAAGGGGGAGAG
GGAGGAGGAGGAGTTGGAGAAAGAGGGAGGAAGGGAGGGAGGGAGAGACG
GAGGGAGGGATATGTAATATATACCTTTTGGCTCGAGAGCACGGGTGTGT
GTGCAAAACAGCGAGGAGCAGGAGGTCGAGCAGGAGGACAAAAAAGAGGG
AGGAGGGAGAAGGAGGAGAGAATGAGAATGTGCAATGTAATATTACTGTT
AAGGACAACGAAGCCGACACGGTTGGTAAAGACGGAAGATGAAGAAGAAG
AAGAAGATGAAGAAGGAGGA
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Coding sequence (CDS) from alignment at chr1:105393..109362-

>NO01G00400.1 ID=NO01G00400.1|Name=NO01G00400.1|organism=Nannochloropsis oceanica|type=CDS|length=1302bp|location=Sequence derived from alignment at chr1:105393..109362- (Nannochloropsis oceanica)
ATGTTGTCCACCACCAAAACAGCCACGACTATCAACAGTAACAGTACCAG
CACCGGCAGTGGCAATAGTATGTCGTCTTCCTCCGCTGCCTCCTTTCCCA
CCATGGAGGCCACCCTCCCCCTCCCCCTCCCTTCGACTTGTCCCCCGGCC
CCTCCCGGTCCTCGCGTGGCGACCATCGAAGCCGAAATTGTGGACCGTCT
TCTGGAGCAGCTCTTGTCCGTCAAGGAGGCAAGACCAGGCACCGAGGTTA
ATTTGGCAGAGGAAGACATTTTCTGGCTCTGCCTACAGTGCCGCAAGACC
TTTCTCTCCCAGCCCATGCTTCTCGAGGTGCAATGCCCCGTTAACATTTG
CGGCGACACCCACGGACAGTACCACGACGTTCTCCGTCTCTTCGAAATGG
GCCACTTCCCGCCCTACAGCAACTACATATTCCTAGGCGACTATGTGGAT
CGAGCGAAGCAGAGCATCGAAACCATGTGCCTCCTCATGTGCTACAAGAT
CAAATACCCGGAGTCCTTTTTCCTCCTTCGCGGCAATCATGAGTGTGCAT
CGCTCAACCGCATCTACGGCTTCTACGACGAGTGCAAACGACGGTATTCA
GTCAAGCTATGGCGCACTTTTTCCGACCTCTTCAACTGCATGCCCGTGGC
GGCCGTCATCGAGGAGAAGATTCTATGTATGCACGGAGGTCTGTCACCAG
AGCTGCACCACCTGTCGCAGATACTGAATTTGCCCCGTCCTGTCGACATT
CCTGACGAAGGCATCCTCTGCGACCTACTCTGGTCGGACCCCGATCCCTC
TCTCGTCGGCTGGGCGCGTAATCCCCGCGGCGTCTCCTACCTCTTTGGAC
ACGACGTAGTGGAGGATTTCTTGGCTTCGCATGATTTAGACTTGATCTGT
CGGGCGCATCAGGTGGTAGAAGACGGCTACGAATTCCAAGCCTCAAGACA
GCTCGTCACACTATTTTCCGCGCCTAATTACTGTGGTGAGTTTGACAATG
CCGGGGCTATGATGTGCATTAATGAAGACTTAATCTGCTCCTTCCGAGTT
CTGAGACCGGCACTACACCAGAGAGGGAAGAAGCGGGAGGGGGGATGGGG
GAGGAGGAGGAGGACGGGGAGAATGACGAGGATGATGCGCTCTTTCCAAC
GATGGGTGACGATGATGATGATGGAAGAAGGAGGGGCTTCTGAGGAAGGG
AGGTGGAGATGGCGAGGATGGTTGAAGGGGGAGAGGGAGGAGGAGGAGTT
GGAGAAAGAGGGAGGAAGGGAGGGAGGGAGAGACGGAGGGAGGGATATGT
AA
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Synonyms
Publications