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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr1 | genome | chr1:80381..84387 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO01G00350.1 vs.
Match: GAX19990.1 (curved DNA-binding protein [Fistulifera solaris]) HSP 1 Score: 293.9 bits (751), Expect = 9.700e-76 Identity = 181/403 (44.91%), Postives = 257/403 (63.77%), Query Frame = 0
Query: 111 ASKKDFYDVLGISKGASKADVKKKYFELAKKYHPDTNKDDPTASKKFMEITEAYEVLGDDKKRQTYDTYGHAAFSQDGGGGGGGNPFAGGGPFGGAGGQGFEFRWGG---PGGAGGGATQVDPEELFRHFEDFFNPFAGAGGGRGGGRARTAAGADLRTGLRLSFMEAVHGVSKDVVVTYLVLG-PDGRPTRKTKTVTVDVPAGVETGVNIRMAGQGGEGAKGAPAGNLYLSIEVEEDPYFKRDGEDIHVEVPVNVAQAMLGATIDVLTLDGMVELKVSQGIQHDTMLLMRGRGVRELQGSRRGNQIVHIKIEVPKSLTAKQKELIQAFQEEEEAKMKKKEGGGGGGGRGGGFFAGGFQERVRDAYTRIKEFMGKKEKDRKGGKEEGKEGGKEGGKEKKTSTA 510
A KKDFY+VLG+S+ A KA++KK YF+LAK+YHPDTN+DD A++KF +TEAYEVL D+K+R YD +GHA + G NPF GG PFGG G F F G G AGG ++DPE+LF + F G+G R G R G+DL+ +RL+F EAV GV KD+ + Y V+ G+ K K VTV +P G++TG+NIR+AGQG EG GAPAGNL + + V+ D YF+RDG D+H EVP++V QA+LG T+DV TL G VE+K+ +G Q DT L++RG+G++EL+G+R+GNQ+VH+K+++PK ++ +Q+EL++ F EE K + G +G A+ ++ GKK+ D+KG ++ K +E ++ A
Sbjct: 31 AGKKDFYEVLGVSRTADKAEIKKAYFKLAKQYHPDTNRDDKEAAEKFKTVTEAYEVLSDEKQRGLYDQFGHAGVDPNFQAG---NPFQGGNPFGGGG---FNFNDGSFHFHGSAGG--QEIDPEDLF-------DMFFGSGRRRPRGPRR---GSDLQMQVRLTFQEAVFGVDKDLNLQYQVVDRKTGQVEVKDKEVTVSIPPGIDTGMNIRLAGQGAEGDPGAPAGNLLVQVIVDPDDYFERDGFDVHTEVPISVTQAILGGTVDVRTLSGEVEVKIPKGCQPDTKLMLRGKGIQELRGTRKGNQVVHLKLQIPKEISPRQEELLREFDEE----TSKHDLG----------ISGRIAHAAESAFEKL---FGKKKHDKKGTAKDSKSSEEEDEEDSNKKQA 398
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO01G00350.1 ID=NO01G00350.1|Name=NO01G00350.1|organism=Nannochloropsis oceanica|type=mRNA|length=2232bp TACGACGTGGGAGGACGAAACCTGACCATAAGTGGCAGAATTGAGTATGT GTGCAGGTTTGGTGTGTGTTCATTGTGAGCAAGGGATGTGTAAGAGTATA TGTGCGGTGGAGGAAAGGCATGGAAAGAGGAGAGGGAGGAGGCTGAGACT GTCTGTTGCTTGCCTGCGCGCAGCCGTCCATTCACCGCCACCCCCCACAT CCTCCAACACCTCCTCGCTCTCCCTTCGTTGCCACTCGAAGAATTACTTC GGCGAGACAGGCATGAGGCATGCAGATATAAGCCTCCTACCCGCAAAAAA GAAACGCAGGGAAGGAGCACACGAGAGCCATGGGTTGCGGCGAGGCGAAG CTGCACGGCGGCGCTGGGACAGCTTGCGTTCTCCGGAAGGAAAGGAAAGG AAATTGAGCACTGAGAACATGAGTGAGAAGGGGAGGAGGAGGAAGAATGG CATAGACTAGTCAAGGCATGTTTTAAAACTGGTTTTTGGATAAAATCAAT GGCTGAGAAGAGATCTCCCTCTTAGGTTTCCCCTCTCCTTCCGCCTTTTG GTTCTTCTACGAGATACTCACATCCCGCACTACGCCACGTACCACACACA CAGGGAGGGGACCAATACAAGAATGCGGGCAGCAGTGGCAGCAGCACGAG AGGGTAGCAGAAAATGCAGTAGCAGGAGTCTGAGCACCGTCAGCAGCAGC AGCAGCAGCGGAGGTAGTGGGGTGTTTCTGTTGCTGGCACGGCGAGGAGA TGGCAGAGGGGGAGGAGGGCTAAGACGGAACCGGGGCGAGACGAGGAGGC GTACGTGCGGGAGCAGCATAAGTAGCAGAGGAGGAGGGATGTTGTTGAGA GGGGCCATAACGGCAGGATCTGACGCGCAGCGACGACAGCAGCAGCGACT GAGAGGTGCCCCTACCCCCTGCTTCTTTCACGCCTCCCCCCGTCTAACCC TGGCCTCCAAGAAGGATTTCTACGACGTGCTGGGCATCTCCAAGGGCGCC AGCAAGGCAGACGTGAAAAAGAAGTACTTCGAGCTTGCCAAGAAATACCA TCCGGACACGAACAAGGATGACCCCACCGCGTCCAAGAAATTTATGGAGA TTACAGAGGCGTATGAAGTGCTGGGCGACGACAAGAAGAGACAGACGTAC GACACGTACGGTCATGCTGCTTTTTCCCAGGACGGAGGAGGAGGGGGAGG AGGGAACCCATTCGCAGGGGGAGGACCCTTTGGAGGAGCTGGAGGGCAGG GTTTTGAGTTTCGATGGGGCGGGCCGGGGGGAGCGGGGGGAGGAGCGACG CAGGTGGACCCTGAGGAGCTCTTCCGTCATTTCGAGGACTTCTTCAATCC CTTCGCAGGGGCCGGCGGAGGGCGGGGGGGAGGACGGGCACGGACGGCTG CTGGTGCTGACCTGCGCACGGGCCTTCGACTGTCTTTCATGGAGGCCGTC CATGGAGTCTCGAAAGACGTGGTAGTGACGTACCTGGTGCTCGGACCGGA CGGGCGGCCGACACGCAAGACCAAGACGGTGACTGTGGACGTGCCGGCGG GCGTGGAGACAGGCGTGAATATTCGAATGGCGGGTCAAGGCGGGGAGGGA GCGAAGGGCGCGCCGGCAGGGAACCTCTACCTGAGCATAGAGGTGGAGGA AGATCCGTACTTCAAGCGCGATGGCGAGGACATCCACGTCGAGGTTCCTG TCAATGTTGCCCAGGCCATGCTGGGTGCGACGATCGACGTCCTCACGCTG GACGGGATGGTGGAGCTGAAGGTCTCCCAGGGCATCCAGCACGACACCAT GCTCCTCATGCGCGGGCGGGGGGTGCGTGAATTGCAGGGCTCACGACGCG GTAATCAGATCGTGCATATTAAGATAGAGGTGCCCAAATCCTTGACAGCA AAACAGAAGGAATTAATCCAAGCCTTCCAAGAAGAGGAGGAGGCCAAGAT GAAGAAGAAGGAGGGGGGAGGGGGAGGGGGGGGGAGAGGGGGAGGTTTCT TCGCGGGTGGATTCCAGGAGAGAGTGAGGGATGCGTATACGCGTATCAAG GAATTTATGGGTAAGAAGGAGAAAGATAGGAAGGGGGGGAAGGAAGAGGG GAAGGAGGGAGGAAAGGAGGGAGGAAAGGAGAAGAAGACGAGTACTGCGG GTAGCTAATAAGATGGAGGAAAGGCGATGAAGAAGGAAGGAGAGAAGGAG GGAAAGAAAGCAATTTTGACTCAGCGGTGACA back to topprotein sequence of NO01G00350.1 >NO01G00350.1-protein ID=NO01G00350.1-protein|Name=NO01G00350.1|organism=Nannochloropsis oceanica|type=polypeptide|length=512bp MRAAVAAAREGSRKCSSRSLSTVSSSSSSGGSGVFLLLARRGDGRGGGGL RRNRGETRRRTCGSSISSRGGGMLLRGAITAGSDAQRRQQQRLRGAPTPC FFHASPRLTLASKKDFYDVLGISKGASKADVKKKYFELAKKYHPDTNKDD PTASKKFMEITEAYEVLGDDKKRQTYDTYGHAAFSQDGGGGGGGNPFAGG GPFGGAGGQGFEFRWGGPGGAGGGATQVDPEELFRHFEDFFNPFAGAGGG RGGGRARTAAGADLRTGLRLSFMEAVHGVSKDVVVTYLVLGPDGRPTRKT KTVTVDVPAGVETGVNIRMAGQGGEGAKGAPAGNLYLSIEVEEDPYFKRD GEDIHVEVPVNVAQAMLGATIDVLTLDGMVELKVSQGIQHDTMLLMRGRG VRELQGSRRGNQIVHIKIEVPKSLTAKQKELIQAFQEEEEAKMKKKEGGG GGGGRGGGFFAGGFQERVRDAYTRIKEFMGKKEKDRKGGKEEGKEGGKEG GKEKKTSTAGS* back to topmRNA from alignment at chr1:80381..84387- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO01G00350.1 ID=NO01G00350.1|Name=NO01G00350.1|organism=Nannochloropsis oceanica|type=mRNA|length=4007bp|location=Sequence derived from alignment at chr1:80381..84387- (Nannochloropsis oceanica) TACGACGTGGGAGGACGAAACCTGACCATAAGTGGCAGAATTGAGTATGT
GTGCAGGTTTGGTGTGTGTTCATTGTGAGCAAGGGATGTGTAAGAGTATA
TGTGCGGTGGAGGAAAGGCATGGAAAGAGGAGAGGGAGGAGGCTGAGACT
GTCTGTTGCTTGCCTGCGCGCAGCCGTCCATTCACCGCCACCCCCCACAT
CCTCCAACACCTCCTCGCTCTCCCTTCGTTGCCACTCGAAGAATTACTTC
GGCGAGACAGGCATGAGGCATGCAGATATAAGCCTCCTACCCGCAAAAAA
GAAACGCAGGGAAGGAGCACACGAGAGCCATGGGTTGCGGCGAGGCGAAG
CTGCACGGCGGCGCTGGGACAGCTTGCGTTCTCCGGAAGGAAAGGAAAGG
AAATTGAGCACTGAGAACATGAGTGAGAAGGGGAGGAGGAGGAAGAATGG
CATAGACTAGTCAAGGCATGTTTTAAAACTGGTTTTTGGATAAAATCAAT
GGCTGAGAAGAGATCTCCCTCTTAGGTTTCCCCTCTCCTTCCGCCTTTTG
GTTCTTCTACGAGATACTCACATCCCGCACTACGCCACGTACCACACACA
CAGGGAGGGGACCAATACAAGAATGCGGGCAGCAGTGGCAGCAGCACGAG
AGGGTAGCAGAAAATGCAGTAGCAGGAGTCTGAGCACCGTCAGCAGCAGC
AGCAGCAGCGGAGGTAGTGGGGTGTTTCTGTTGCTGGCACGGCGAGGAGA
TGGCAGAGGGGGAGGAGGGCTAAGACGGAACCGGGGCGAGACGAGGAGGC
GTACGTGCGGGAGCAGCATAAGTAGCAGAGGAGGAGGGATGTTGTTGAGA
GGGGCCATAACGGCAGGATCTGACGCGCAGCGACGACAGCAGCAGCGACT
GAGAGGGTGAGTGGGGGGCGGGGCATATATATGTATATGTACATGAATAT
ATAAGAGTGTGATACCTGTTTTGCATTGAGCGCTCCTTGTGTACATCCAC
ACTGTCCGCTCATCACTCTTCTCCTTCCGTCCCCCCTCCCTCCCTTTCTT
GTTCCCTCCCTCGCAGTGCCCCTACCCCCTGCTTCTTTCACGCCTCCCCC
CGTCTAACCCTGGCCTCCAAGAAGGATTTCTACGACGTGCTGGGCATCTC
CAAGGGCGCCAGCAAGGCAGACGTGAAAAAGAAGTACTTCGAGCTTGCCA
AGAAATACCATCCGGTAAGGGAGGGAGGGAGGGAGGGATGGCGGGAGGGA
GGGAGGGAGGGAGGGAGGAGACACAGAGAGAAGGGGAGTGTTTTCCGGTC
CTGCGGACTTTCTGTATTCTAGCGATCAACCTGTGCGTGGCACGTACACA
ACCCGTCCCTCATTAACGATCTCCCTCTATCCCACTCTCCCTCCCTCGCT
CACTCCCTCTCTCCCTCTTTCGATATGTGCTCGCCGAGGCGCACGAATCC
ACTTCGACGTGTTCTGACAACCCCGCCTTCCCTCCCTCCCTCCCTCCCTC
CCTCCCCCCTCCCTTCCAGGACACGAACAAGGATGACCCCACCGCGTCCA
AGAAATTTATGGAGATTACAGAGGCGTATGAAGTGCTGGGCGACGACAAG
AAGAGACAGGTAGGGGGGGAAGGGAGGGAGGGAGGGAAGAAGGGAGGGAG
GGAGGGAGGGAGGGAAGGCGGTGGGCGATATAAAGGCTGGCGTCAACCCT
CGTCTTCTGCAAATGTGACCTAACAGGCTCTAACCCTCCCTCCCCTCCCT
CTTTCCCTCCCTCCCTCCTTCAGACGTACGACACGTACGGTCATGCTGCT
TTTTCCCAGGACGGAGGAGGAGGGGGAGGAGGGAACCCATTCGCAGGGGG
AGGACCCTTTGGAGGAGCTGGAGGGCAGGGTTTTGAGTTTCGATGGGGCG
GGCCGGGGGGAGCGGGGGGAGGAGCGACGCAGGTAGGGAGGGAGGTAGGG
AGGTAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGAGGGAGGGAGGGAGGG
AGGGAGGGAGAGAGAGAGAGGGAAGGAGGCTCAGGTTGGGATTGTTTGTC
CTGCTTTCCTCTTGTTGTGCTCACCTCTCCATTTCCTCCCTCCCTCCCTC
CCTCCCTCCCTCCCTCCCTCCCTCCCTTCCTCCCTCCCTCCCTCCCAGGT
GGACCCTGAGGAGCTCTTCCGTCATTTCGAGGACTTCTTCAATCCCTTCG
CAGGGGCCGGCGGAGGGCGGGGGGGAGGACGGGCACGGACGGCTGCTGGT
GCTGACCTGCGCACGGGCCTTCGACTGTCTTTCATGGAGGCCGTCCATGG
AGTCTCGAAAGACGTGGTAGTGACGTACCTGGTGCTCGGACCGGTAGGGA
GGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGGGT
TGGAGCTAGCTACAACTATGATCCATCTCTGAATCCACTTCCCTCCCTCC
CTCCCTCCCTCTATCCCTTCTTCAGGACGGGCGGCCGACACGCAAGACCA
AGACGGTGACTGTGGACGTGCCGGCGGGCGTGGAGACAGGCGTGAATATT
CGAATGGCGGGTCAAGGCGGGGAGGGAGCGAAGGGCGCGCCGGCAGGGAA
CCTCTACCTGAGCATAGAGGTGAGGGAGGAAGGGAGGAAGGGAGAGGGAG
TGACGATGTGCGTGGTAATGAGGGAGGGAGGGAGAGAGGGAGAGACGGAG
GGAGGGAGAGACGGAGGGACGGTGTGCGTGGTGGTACTATCTTGTTTCCG
AGGCAGGGAGGCAGGCAGGCAGGGAGGGAGGGGGAGGGAGGGAGGGAGGA
GGGAGAGTGAAGACACTGTAGTTTACGTGCGTCTCTTTCTACACCGGTTT
CCTGCAGGTGGAGGAAGATCCGTACTTCAAGCGCGATGGCGAGGACATCC
ACGTCGAGGTTCCTGTCAATGTACGCACACCCTCCCTCTCTCCCTCCCTC
CCTCCCTTCCCCCCCCCTCTCTTTCTCTCTCTCGTTTCATCCGACACTGC
AGGCCCCTCACCGAGTCCTTCTAGACGTCCTCACCGAGTCCTCCCTTGGA
CTCGAAGGCACAAGCAGCCAGTCCTCACCCCTCACCCCCTACCTCCCTTC
GTGCCACCTCAGGTTGCCCAGGCCATGCTGGGTGCGACGATCGACGTCCT
CACGCTGGACGGGATGGTGGAGCTGAAGGTCTCCCAGGGCATCCAGCACG
ACACCATGCTCCTCATGCGCGGGCGGGGGGTGCGTGAATTGCAGGTGAGC
AGGGAGGGAGACAGCGAGGGAAGGAGGGAAACAGCGAGGGAAGGAGGGCG
GGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGGGAGGAGGTTAA
AGCGCTGCAGACTATCAAGTGCAGCGTCATGGCCATGATGTGTGGGAGGG
GGAAGAGGTTAAACGTCATGGCCGTGATGTGTGAGAGGGTTGCGCAAATT
GCAAATTGAACAATTGCGAAGTGGAAAGGGAAGGCAAAATGGAGGGAATG
AGAGAGGGAGGGAAGGAGGGAGGGTGGGAGCAAGAGATGATGGCGAAGGA
GAATTAATTTGAATCATTATGTGCGCTGACCCACTATCCCTCCCTCCCTC
CCTCTCCCTCAGGGCTCACGACGCGGTAATCAGATCGTGCATATTAAGAT
AGAGGTGCCCAAATCCTTGACAGCAAAACAGAAGGAATTAATCCAAGCCT
TCCAAGAAGAGGAGGAGGCCAAGATGAAGAAGAAGGAGGGGGGAGGGGGA
GGGGGGGGGAGAGGGGGAGGTTTCTTCGCGGGTGGATTCCAGGAGAGAGT
GAGGGATGCGTATACGCGTATCAAGGAATTTATGGGTAAGAAGGAGAAAG
ATAGGAAGGGGGGGAAGGAAGAGGGGAAGGAGGGAGGAAAGGAGGGAGGA
AAGGAGAAGAAGACGAGTACTGCGGGTAGCTAATAAGATGGAGGAAAGGC
GATGAAGAAGGAAGGAGAGAAGGAGGGAAAGAAAGCAATTTTGACTCAGC
GGTGACA back to topCoding sequence (CDS) from alignment at chr1:80381..84387- >NO01G00350.1 ID=NO01G00350.1|Name=NO01G00350.1|organism=Nannochloropsis oceanica|type=CDS|length=1536bp|location=Sequence derived from alignment at chr1:80381..84387- (Nannochloropsis oceanica) ATGCGGGCAGCAGTGGCAGCAGCACGAGAGGGTAGCAGAAAATGCAGTAG CAGGAGTCTGAGCACCGTCAGCAGCAGCAGCAGCAGCGGAGGTAGTGGGG TGTTTCTGTTGCTGGCACGGCGAGGAGATGGCAGAGGGGGAGGAGGGCTA AGACGGAACCGGGGCGAGACGAGGAGGCGTACGTGCGGGAGCAGCATAAG TAGCAGAGGAGGAGGGATGTTGTTGAGAGGGGCCATAACGGCAGGATCTG ACGCGCAGCGACGACAGCAGCAGCGACTGAGAGGTGCCCCTACCCCCTGC TTCTTTCACGCCTCCCCCCGTCTAACCCTGGCCTCCAAGAAGGATTTCTA CGACGTGCTGGGCATCTCCAAGGGCGCCAGCAAGGCAGACGTGAAAAAGA AGTACTTCGAGCTTGCCAAGAAATACCATCCGGACACGAACAAGGATGAC CCCACCGCGTCCAAGAAATTTATGGAGATTACAGAGGCGTATGAAGTGCT GGGCGACGACAAGAAGAGACAGACGTACGACACGTACGGTCATGCTGCTT TTTCCCAGGACGGAGGAGGAGGGGGAGGAGGGAACCCATTCGCAGGGGGA GGACCCTTTGGAGGAGCTGGAGGGCAGGGTTTTGAGTTTCGATGGGGCGG GCCGGGGGGAGCGGGGGGAGGAGCGACGCAGGTGGACCCTGAGGAGCTCT TCCGTCATTTCGAGGACTTCTTCAATCCCTTCGCAGGGGCCGGCGGAGGG CGGGGGGGAGGACGGGCACGGACGGCTGCTGGTGCTGACCTGCGCACGGG CCTTCGACTGTCTTTCATGGAGGCCGTCCATGGAGTCTCGAAAGACGTGG TAGTGACGTACCTGGTGCTCGGACCGGACGGGCGGCCGACACGCAAGACC AAGACGGTGACTGTGGACGTGCCGGCGGGCGTGGAGACAGGCGTGAATAT TCGAATGGCGGGTCAAGGCGGGGAGGGAGCGAAGGGCGCGCCGGCAGGGA ACCTCTACCTGAGCATAGAGGTGGAGGAAGATCCGTACTTCAAGCGCGAT GGCGAGGACATCCACGTCGAGGTTCCTGTCAATGTTGCCCAGGCCATGCT GGGTGCGACGATCGACGTCCTCACGCTGGACGGGATGGTGGAGCTGAAGG TCTCCCAGGGCATCCAGCACGACACCATGCTCCTCATGCGCGGGCGGGGG GTGCGTGAATTGCAGGGCTCACGACGCGGTAATCAGATCGTGCATATTAA GATAGAGGTGCCCAAATCCTTGACAGCAAAACAGAAGGAATTAATCCAAG CCTTCCAAGAAGAGGAGGAGGCCAAGATGAAGAAGAAGGAGGGGGGAGGG GGAGGGGGGGGGAGAGGGGGAGGTTTCTTCGCGGGTGGATTCCAGGAGAG AGTGAGGGATGCGTATACGCGTATCAAGGAATTTATGGGTAAGAAGGAGA AAGATAGGAAGGGGGGGAAGGAAGAGGGGAAGGAGGGAGGAAAGGAGGGA GGAAAGGAGAAGAAGACGAGTACTGCGGGTAGCTAA back to top
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