NO01G00300.1, NO01G00300.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO01G00300.1
Unique Name	NO01G00300.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1065
Alignment location	chr1:52680..53830 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr1	genome	chr1:52680..53830 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

The following BLAST results are available for this feature:

BLAST of NO01G00300.1 vs.

BLAST of NO01G00300.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO01G00300	NO01G00300	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO01G00300.1	NO01G00300.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO01G00300.1.cds1	NO01G00300.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO01G00300.1.cds2	NO01G00300.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr1:52680..53830-
coding sequence from alignment at chr1:52680..53830-

mRNA sequence

>NO01G00300.1 ID=NO01G00300.1|Name=NO01G00300.1|organism=Nannochloropsis oceanica|type=mRNA|length=1065bp
ATGGGCAACAAAGGCAGTACGCCGGCCGAAGGAGACGAGGCTGAGATCCC
CACAGTGCCGGCTGCTACCACCACGCCGCCTTCCACAGATGCCGTGCCAC
CGCCGCCGCTGCCAGCGGAAAAAAAAGCGGGACTGGCCAAGTTGCTGACC
CCAGCGGACCTCCTGAAGCGAGGAGGGGAGGGCGATCGCCCTGTGCAGCC
TACTTCTCGGAGCAGCGGCGCCGAGGAAGGTAGCACCAAAGCAAATAAGG
GAGAGAAGAAGGGGAAGAAACAAATGGAGGAAGGAAAGGAGAAGGAGGCT
GCTCGAGAGACACTGCTGAGCATGCTCGGGAGGGCGAGTGCTGCGGCAAG
TGAGGCCCAACCCCCTCCACGTCCTACTCCATCTCAGCAAGCCCCACCTC
CCCCTGCGTCGAAGCCTGTCGCTCCTGCTGCATCGAAAGGCATCAAGGCC
ATCTCGATCAGTGAGCTGGAGGCGCGCGTGGGAGGTGGGCGACCAGTAGA
GGGGGGAAAGGGCATAGGGCGGGGGGAAGTAGGAGCAGGAGGAGGAAACG
AGGAACGAGGCAAGGCGCTCATTTCGATGTTGTCGCAAGCAAATAAAACG
GGGAGTAATAAAGCTACGGTCGCGCAGCCATCTACTCCTCCGTCGGCGGG
GGTGGTACGGAGGGATCATTCCAAGGAAGCGGCCTTGAAGGGGATGCTTT
TTGGGGGCGGAGGAGGAGGGGGAGGTGGGGGGGGGAAGTTGAGCAGGCAA
TTGGTGGTGTTACAAGGAGGAGGAGGGGGTGGAGGAGGAGGGAAGAATAG
CGGAGTGGCACCACCGCCGCCGCAAGCAGCGACCGCAGCAGCAGTAGCAG
CCGCCCCTCCGAGCACGTTCGCCTGGTCATCGTTCCAGCGCTCTCCTGAC
CCCAAGACCATTCCCATGCCGCCCGCCGTCTTTAAGGGGCCGGGTTTGGC
GCTGGGGGAGGAGGGGGAGGAGGAGGGGAGAGAGGGTGGAGGGGCAGGAA
TTCGGACGGTAGTGGAAGTGCAGGACGCAACGAAAGATCTGAAGAATTTG
CTGAAGCTTGGATGA

protein sequence of NO01G00300.1

>NO01G00300.1-protein ID=NO01G00300.1-protein|Name=NO01G00300.1|organism=Nannochloropsis oceanica|type=polypeptide|length=355bp
MGNKGSTPAEGDEAEIPTVPAATTTPPSTDAVPPPPLPAEKKAGLAKLLT
PADLLKRGGEGDRPVQPTSRSSGAEEGSTKANKGEKKGKKQMEEGKEKEA
ARETLLSMLGRASAAASEAQPPPRPTPSQQAPPPPASKPVAPAASKGIKA
ISISELEARVGGGRPVEGGKGIGRGEVGAGGGNEERGKALISMLSQANKT
GSNKATVAQPSTPPSAGVVRRDHSKEAALKGMLFGGGGGGGGGGGKLSRQ
LVVLQGGGGGGGGGKNSGVAPPPPQAATAAAVAAAPPSTFAWSSFQRSPD
PKTIPMPPAVFKGPGLALGEEGEEEGREGGGAGIRTVVEVQDATKDLKNL
LKLG*

mRNA from alignment at chr1:52680..53830-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO01G00300.1 ID=NO01G00300.1|Name=NO01G00300.1|organism=Nannochloropsis oceanica|type=mRNA|length=1151bp|location=Sequence derived from alignment at chr1:52680..53830- (Nannochloropsis oceanica)
ATGGGCAACAAAGGCAGTACGCCGGCCGAAGGAGACGAGGCTGAGATCCC
CACAGTGCCGGCTGCTACCACCACGCCGCCTTCCACAGATGCCGTGCCAC
CGCCGCCGCTGCCAGCGGAAAAAAAAGCGGGACTGGCCAAGTTGCTGACC
CCAGCGGACCTCCTGAAGCGAGGAGGGGAGGGCGATCGCCCTGTGCAGCC
TACTTCTCGGAGCAGCGGCGCCGAGGAAGGTAGCACCAAAGCAAATAAGG
GAGAGAAGAAGGGGAAGAAACAAATGGAGGAAGGAAAGGAGAAGGAGGCT
GCTCGAGAGACACTGCTGAGCATGCTCGGGAGGGCGAGTGCTGCGGCAAG
TGAGGCCCAACCCCCTCCACGTCCTACTCCATCTCAGCAAGCCCCACCTC
CCCCTGCGTCGAAGCCTGTCGCTCCTGCTGCATCGAAAGGCATCAAGGCC
ATCTCGATCAGTGAGCTGGAGGCGCGCGTGGGAGGTGGGCGACCAGTAGA
GGGGGGAAAGGGCATAGGGCGGGGGGAAGTAGGAGCAGGAGGAGGAAACG
AGGAACGAGGCAAGGCGCTCATTTCGATGTTGTCGCAAGCAAATAAAACG
GGGAGTAATAAAGCTACGGTCGCGCAGCCATCTACTCCTCCGTCGGCGGG
GGTGGTACGGAGGGATCATTCCAAGGAAGCGGCCTTGAAGGGGATGCTTT
TTGGGGGCGGAGGAGGAGGGGGAGGTGGGGGGGGGAAGTTGAGCAGGCAA
TTGGTGGTGTTGTAAGAACAGGAGGGGGAGAAGGGGGAAATGGTAACAAC
AGCAAGAGTTCACGTCGACGGAAGGGGGGTAAGGACCACGGGAATAGACA
AGGAGGAGGAGGGGGTGGAGGAGGAGGGAAGAATAGCGGAGTGGCACCAC
CGCCGCCGCAAGCAGCGACCGCAGCAGCAGTAGCAGCCGCCCCTCCGAGC
ACGTTCGCCTGGTCATCGTTCCAGCGCTCTCCTGACCCCAAGACCATTCC
CATGCCGCCCGCCGTCTTTAAGGGGCCGGGTTTGGCGCTGGGGGAGGAGG
GGGAGGAGGAGGGGAGAGAGGGTGGAGGGGCAGGAATTCGGACGGTAGTG
GAAGTGCAGGACGCAACGAAAGATCTGAAGAATTTGCTGAAGCTTGGATG
A

Coding sequence (CDS) from alignment at chr1:52680..53830-

>NO01G00300.1 ID=NO01G00300.1|Name=NO01G00300.1|organism=Nannochloropsis oceanica|type=CDS|length=1065bp|location=Sequence derived from alignment at chr1:52680..53830- (Nannochloropsis oceanica)
ATGGGCAACAAAGGCAGTACGCCGGCCGAAGGAGACGAGGCTGAGATCCC
CACAGTGCCGGCTGCTACCACCACGCCGCCTTCCACAGATGCCGTGCCAC
CGCCGCCGCTGCCAGCGGAAAAAAAAGCGGGACTGGCCAAGTTGCTGACC
CCAGCGGACCTCCTGAAGCGAGGAGGGGAGGGCGATCGCCCTGTGCAGCC
TACTTCTCGGAGCAGCGGCGCCGAGGAAGGTAGCACCAAAGCAAATAAGG
GAGAGAAGAAGGGGAAGAAACAAATGGAGGAAGGAAAGGAGAAGGAGGCT
GCTCGAGAGACACTGCTGAGCATGCTCGGGAGGGCGAGTGCTGCGGCAAG
TGAGGCCCAACCCCCTCCACGTCCTACTCCATCTCAGCAAGCCCCACCTC
CCCCTGCGTCGAAGCCTGTCGCTCCTGCTGCATCGAAAGGCATCAAGGCC
ATCTCGATCAGTGAGCTGGAGGCGCGCGTGGGAGGTGGGCGACCAGTAGA
GGGGGGAAAGGGCATAGGGCGGGGGGAAGTAGGAGCAGGAGGAGGAAACG
AGGAACGAGGCAAGGCGCTCATTTCGATGTTGTCGCAAGCAAATAAAACG
GGGAGTAATAAAGCTACGGTCGCGCAGCCATCTACTCCTCCGTCGGCGGG
GGTGGTACGGAGGGATCATTCCAAGGAAGCGGCCTTGAAGGGGATGCTTT
TTGGGGGCGGAGGAGGAGGGGGAGGTGGGGGGGGGAAGTTGAGCAGGCAA
TTGGTGGTGTTACAAGGAGGAGGAGGGGGTGGAGGAGGAGGGAAGAATAG
CGGAGTGGCACCACCGCCGCCGCAAGCAGCGACCGCAGCAGCAGTAGCAG
CCGCCCCTCCGAGCACGTTCGCCTGGTCATCGTTCCAGCGCTCTCCTGAC
CCCAAGACCATTCCCATGCCGCCCGCCGTCTTTAAGGGGCCGGGTTTGGC
GCTGGGGGAGGAGGGGGAGGAGGAGGGGAGAGAGGGTGGAGGGGCAGGAA
TTCGGACGGTAGTGGAAGTGCAGGACGCAACGAAAGATCTGAAGAATTTG
CTGAAGCTTGGATGA

Synonyms

Publications