NO01G00270.1, NO01G00270.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G00270.1
Unique NameNO01G00270.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1200
Alignment locationchr1:46416..47615 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:46416..47615 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G00270.1 vs.
Match: EWM28945.1 (mitochondrial carrier [Nannochloropsis gaditana])

HSP 1 Score: 516.2 bits (1328), Expect = 9.400e-143
Identity = 286/405 (70.62%), Postives = 324/405 (80.00%), Query Frame = 0 
Query:    1 MRLPQLLLVVATLVCDGAAMLSSKQSKPLMMTLPSSASVSASSPPCWTRRLSAAIATTTTSHNKRRGNDNDDALLLAANQRRIEEQQHA-LSSLRTTRGGGGGSAAAGAVDAGWATIIEGLKNGCASGLAAACAKLLLQPFDTVKTLQQANKGSLGMFEAARDLAARRGVRSLYTGLGVTLVGSIPAVSIYFGVYQAVKKALLQALPPTLGWTLLGVAASAGVGNTVASVFRVPYEVVKQRLQAGMYSSTGEALRTMYRTEGGLGAFFGSSGVASQIMRDVPYAIVTLLTYESLRRARAAAR-----RKAGGGKLSTPLEDSMMGAFAGGVGSLVSNPMDVVKTRVMTQPGLYPTVWSAVRGLWADEGAAAFLKGTVPRLLHKVPANAIFFATYEIFRGLLRVQG 400
            M + ++LL V TL C  AAM S +    ++M  P S   SA   P  T   +      +     R+G        +++ ++RIEE + A L++LR   GGGGG+AA+G  +AGWAT++EGLKNGCASG+AAACAKLLLQPFDTVKTLQQANKGSLGM EAA+DL +R+GV +LYTGLGVTLVGSIPAVS+YFGVYQAVKKALLQALPP LGW+LLGVAASAGVGNTVAS+FRVPYEVVKQRLQAGMY STG+ALRTMYRTEGGL AFFG+SGVASQI+RDVPYAIVTLLTYES+RR RA  R      K G  K ST LEDS+MGA AGGVGSLVSNPMDVVKTRVMTQPGLYPTVWSAV  +W +EG +AF KGTVPRLLHKVPANAIFFATYEIFRGLLRVQG
Sbjct:   24 MLVSRILLPVITLACSAAAMSSKRH---VLMVPPCSTLRSACRLPLATASTTDLFGAVSHKQPCRQGVGRRRIDTISSGRQRIEEPRDAFLAALRARGGGGGGAAASGLSNAGWATVVEGLKNGCASGMAAACAKLLLQPFDTVKTLQQANKGSLGMLEAAQDLVSRKGVSALYTGLGVTLVGSIPAVSVYFGVYQAVKKALLQALPPGLGWSLLGVAASAGVGNTVASIFRVPYEVVKQRLQAGMYVSTGQALRTMYRTEGGLLAFFGTSGVASQILRDVPYAIVTLLTYESMRRTRAERRLGPGESKGGLTKGSTALEDSVMGALAGGVGSLVSNPMDVVKTRVMTQPGLYPTVWSAVSKVWVEEGPSAFFKGTVPRLLHKVPANAIFFATYEIFRGLLRVQG 425
The following BLAST results are available for this feature:
BLAST of NO01G00270.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28945.19.400e-14370.62mitochondrial carrier [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G00270NO01G00270Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G00270.1NO01G00270.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G00270.1.cds1NO01G00270.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G00270.1 ID=NO01G00270.1|Name=NO01G00270.1|organism=Nannochloropsis oceanica|type=mRNA|length=1200bp
ATGCGGCTACCACAACTCCTGCTGGTGGTGGCAACACTGGTGTGCGATGG
TGCGGCCATGTTATCTTCAAAGCAATCCAAACCCTTAATGATGACCCTGC
CTTCCTCCGCCTCTGTCTCCGCCTCCTCCCCTCCTTGTTGGACTCGCCGT
CTCTCCGCCGCCATTGCCACCACTACAACCAGTCACAATAAGAGAAGAGG
AAATGACAACGATGATGCTCTTCTACTCGCTGCGAACCAGAGAAGAATAG
AGGAACAGCAACACGCCTTGTCCTCCCTCCGCACAACTCGAGGTGGTGGC
GGTGGGTCGGCGGCTGCGGGAGCAGTGGATGCGGGGTGGGCCACAATCAT
CGAAGGCCTGAAGAATGGCTGCGCCAGTGGCCTGGCCGCTGCGTGTGCCA
AACTTCTCCTCCAACCCTTTGACACGGTCAAGACCCTTCAGCAGGCCAAC
AAGGGCTCGCTAGGCATGTTTGAGGCAGCTCGAGACCTGGCGGCGCGGCG
GGGCGTCCGCTCCCTCTACACGGGCCTCGGGGTGACCCTCGTCGGCTCCA
TCCCCGCCGTCTCCATCTACTTTGGCGTCTACCAGGCCGTCAAGAAGGCC
TTGCTGCAAGCCCTCCCTCCCACCCTGGGTTGGACCCTGCTAGGCGTGGC
GGCTTCGGCCGGAGTGGGCAACACTGTCGCCTCCGTCTTTCGGGTACCGT
ACGAGGTGGTGAAACAGCGGCTGCAGGCGGGCATGTACAGCAGCACAGGG
GAGGCTTTGCGCACCATGTACCGGACGGAGGGTGGGCTGGGCGCTTTCTT
TGGGAGCAGCGGCGTAGCTTCGCAGATCATGCGGGATGTGCCCTATGCCA
TCGTCACCCTGCTCACTTACGAATCCCTCCGACGGGCTCGAGCAGCGGCC
CGGCGAAAAGCCGGAGGGGGAAAGCTGTCCACGCCCTTGGAGGACTCGAT
GATGGGAGCCTTTGCTGGGGGGGTGGGCTCCCTCGTGTCGAATCCCATGG
ACGTGGTCAAGACGCGCGTTATGACCCAACCTGGCCTCTACCCCACCGTA
TGGTCGGCCGTGCGGGGGCTATGGGCGGACGAGGGGGCGGCCGCGTTCCT
CAAGGGCACAGTGCCGCGGCTACTGCACAAGGTGCCGGCCAATGCCATCT
TTTTTGCCACGTACGAGATCTTTCGGGGGCTGTTGCGCGTGCAGGGTTAG
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protein sequence of NO01G00270.1

>NO01G00270.1-protein ID=NO01G00270.1-protein|Name=NO01G00270.1|organism=Nannochloropsis oceanica|type=polypeptide|length=400bp
MRLPQLLLVVATLVCDGAAMLSSKQSKPLMMTLPSSASVSASSPPCWTRR
LSAAIATTTTSHNKRRGNDNDDALLLAANQRRIEEQQHALSSLRTTRGGG
GGSAAAGAVDAGWATIIEGLKNGCASGLAAACAKLLLQPFDTVKTLQQAN
KGSLGMFEAARDLAARRGVRSLYTGLGVTLVGSIPAVSIYFGVYQAVKKA
LLQALPPTLGWTLLGVAASAGVGNTVASVFRVPYEVVKQRLQAGMYSSTG
EALRTMYRTEGGLGAFFGSSGVASQIMRDVPYAIVTLLTYESLRRARAAA
RRKAGGGKLSTPLEDSMMGAFAGGVGSLVSNPMDVVKTRVMTQPGLYPTV
WSAVRGLWADEGAAAFLKGTVPRLLHKVPANAIFFATYEIFRGLLRVQG*
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mRNA from alignment at chr1:46416..47615-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G00270.1 ID=NO01G00270.1|Name=NO01G00270.1|organism=Nannochloropsis oceanica|type=mRNA|length=1200bp|location=Sequence derived from alignment at chr1:46416..47615- (Nannochloropsis oceanica)
ATGCGGCTACCACAACTCCTGCTGGTGGTGGCAACACTGGTGTGCGATGG
TGCGGCCATGTTATCTTCAAAGCAATCCAAACCCTTAATGATGACCCTGC
CTTCCTCCGCCTCTGTCTCCGCCTCCTCCCCTCCTTGTTGGACTCGCCGT
CTCTCCGCCGCCATTGCCACCACTACAACCAGTCACAATAAGAGAAGAGG
AAATGACAACGATGATGCTCTTCTACTCGCTGCGAACCAGAGAAGAATAG
AGGAACAGCAACACGCCTTGTCCTCCCTCCGCACAACTCGAGGTGGTGGC
GGTGGGTCGGCGGCTGCGGGAGCAGTGGATGCGGGGTGGGCCACAATCAT
CGAAGGCCTGAAGAATGGCTGCGCCAGTGGCCTGGCCGCTGCGTGTGCCA
AACTTCTCCTCCAACCCTTTGACACGGTCAAGACCCTTCAGCAGGCCAAC
AAGGGCTCGCTAGGCATGTTTGAGGCAGCTCGAGACCTGGCGGCGCGGCG
GGGCGTCCGCTCCCTCTACACGGGCCTCGGGGTGACCCTCGTCGGCTCCA
TCCCCGCCGTCTCCATCTACTTTGGCGTCTACCAGGCCGTCAAGAAGGCC
TTGCTGCAAGCCCTCCCTCCCACCCTGGGTTGGACCCTGCTAGGCGTGGC
GGCTTCGGCCGGAGTGGGCAACACTGTCGCCTCCGTCTTTCGGGTACCGT
ACGAGGTGGTGAAACAGCGGCTGCAGGCGGGCATGTACAGCAGCACAGGG
GAGGCTTTGCGCACCATGTACCGGACGGAGGGTGGGCTGGGCGCTTTCTT
TGGGAGCAGCGGCGTAGCTTCGCAGATCATGCGGGATGTGCCCTATGCCA
TCGTCACCCTGCTCACTTACGAATCCCTCCGACGGGCTCGAGCAGCGGCC
CGGCGAAAAGCCGGAGGGGGAAAGCTGTCCACGCCCTTGGAGGACTCGAT
GATGGGAGCCTTTGCTGGGGGGGTGGGCTCCCTCGTGTCGAATCCCATGG
ACGTGGTCAAGACGCGCGTTATGACCCAACCTGGCCTCTACCCCACCGTA
TGGTCGGCCGTGCGGGGGCTATGGGCGGACGAGGGGGCGGCCGCGTTCCT
CAAGGGCACAGTGCCGCGGCTACTGCACAAGGTGCCGGCCAATGCCATCT
TTTTTGCCACGTACGAGATCTTTCGGGGGCTGTTGCGCGTGCAGGGTTAG
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Coding sequence (CDS) from alignment at chr1:46416..47615-

>NO01G00270.1 ID=NO01G00270.1|Name=NO01G00270.1|organism=Nannochloropsis oceanica|type=CDS|length=1200bp|location=Sequence derived from alignment at chr1:46416..47615- (Nannochloropsis oceanica)
ATGCGGCTACCACAACTCCTGCTGGTGGTGGCAACACTGGTGTGCGATGG
TGCGGCCATGTTATCTTCAAAGCAATCCAAACCCTTAATGATGACCCTGC
CTTCCTCCGCCTCTGTCTCCGCCTCCTCCCCTCCTTGTTGGACTCGCCGT
CTCTCCGCCGCCATTGCCACCACTACAACCAGTCACAATAAGAGAAGAGG
AAATGACAACGATGATGCTCTTCTACTCGCTGCGAACCAGAGAAGAATAG
AGGAACAGCAACACGCCTTGTCCTCCCTCCGCACAACTCGAGGTGGTGGC
GGTGGGTCGGCGGCTGCGGGAGCAGTGGATGCGGGGTGGGCCACAATCAT
CGAAGGCCTGAAGAATGGCTGCGCCAGTGGCCTGGCCGCTGCGTGTGCCA
AACTTCTCCTCCAACCCTTTGACACGGTCAAGACCCTTCAGCAGGCCAAC
AAGGGCTCGCTAGGCATGTTTGAGGCAGCTCGAGACCTGGCGGCGCGGCG
GGGCGTCCGCTCCCTCTACACGGGCCTCGGGGTGACCCTCGTCGGCTCCA
TCCCCGCCGTCTCCATCTACTTTGGCGTCTACCAGGCCGTCAAGAAGGCC
TTGCTGCAAGCCCTCCCTCCCACCCTGGGTTGGACCCTGCTAGGCGTGGC
GGCTTCGGCCGGAGTGGGCAACACTGTCGCCTCCGTCTTTCGGGTACCGT
ACGAGGTGGTGAAACAGCGGCTGCAGGCGGGCATGTACAGCAGCACAGGG
GAGGCTTTGCGCACCATGTACCGGACGGAGGGTGGGCTGGGCGCTTTCTT
TGGGAGCAGCGGCGTAGCTTCGCAGATCATGCGGGATGTGCCCTATGCCA
TCGTCACCCTGCTCACTTACGAATCCCTCCGACGGGCTCGAGCAGCGGCC
CGGCGAAAAGCCGGAGGGGGAAAGCTGTCCACGCCCTTGGAGGACTCGAT
GATGGGAGCCTTTGCTGGGGGGGTGGGCTCCCTCGTGTCGAATCCCATGG
ACGTGGTCAAGACGCGCGTTATGACCCAACCTGGCCTCTACCCCACCGTA
TGGTCGGCCGTGCGGGGGCTATGGGCGGACGAGGGGGCGGCCGCGTTCCT
CAAGGGCACAGTGCCGCGGCTACTGCACAAGGTGCCGGCCAATGCCATCT
TTTTTGCCACGTACGAGATCTTTCGGGGGCTGTTGCGCGTGCAGGGTTAG
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Synonyms
Publications