NO01G00260.1, NO01G00260.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO01G00260.1
Unique Name	NO01G00260.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2214
Alignment location	chr1:43955..46168 +

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr1	genome	chr1:43955..46168 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO01G00260.1 vs.
Match: EWM28941.1 (protein kinase domain containing protein [Nannochloropsis gaditana])

HSP 1 Score: 555.4 bits (1430), Expect = 2.600e-154
Identity = 307/450 (68.22%), Postives = 341/450 (75.78%), Query Frame = 0

Query:   46 PSSFSSLPSFPSYPPSSS----FTTIQDFHVLAKLGLGAYGSVYQVVRKADHHTYAMKRVNLDGLDQRDLAMALNEIRLLASFRHPRIIRCYETFMDGPTHLCIVMEYCGFQDLARKIQRYRTRGERVDERVVWVYLVQCLEALSALHALRVLHRDIKPANILLDEEGNAKLGDMNVSKSLDDETGEVQSVMGTLPYMAPEIWEGKPYGFAADLYSLGCTLFELTTLVQPFDGPNPLYLRRAVLKRQFQARLDTDDFYSQELRDLILLRLLHPDPAQRLTADSLMRVPEVASRLDLVRHKLPKDLPASLPLTPAALLIHHLNSNGGNSSSSGSSNSKEEEGVDTGAETPSSRRIIVTATSTNYTSSSNNNNNDNDTTVNSLSLTLEELPFLLPHLLPGPSYP------TLSPPPSPPSPSATPNVNRSNSRSNNSIDTPSNATFLPSPLP 486
            P+S SS    P+  P+SS     TTIQDFHVL+KLGLGAYGSVYQV+RKAD+HTYA+KRVNL+GLDQRDLAMALNEIRLL+SFRHPRIIRCYETF+DGPTHLCIVMEYCGFQDLARKIQRYR RGERVDERVVWVYLVQCLEALSALHALRVLHRDIKPANILLD+EGNAKLGD+NVSK LDDETGE+ +V GTLPYMAPEIWEGKPYGFA+DLYSLGCTLFELT LV PFDGP PL+LRRAVLKRQFQ+ L TD  YS +LR +IL RLLH DPAQRLTADSLM++PEVASRL+LVRHKLP DLPA+LPLTP++LL+ HLN+    +SS      K  EG     E   +                    + N+    S SLTL  LP LLP LLPGPSYP       LSP  S P  S+ P  +R  +      D P  A  LP P P
Sbjct:    9 PTSSSSF--LPALSPNSSSHNPITTIQDFHVLSKLGLGAYGSVYQVIRKADNHTYAIKRVNLEGLDQRDLAMALNEIRLLSSFRHPRIIRCYETFLDGPTHLCIVMEYCGFQDLARKIQRYRARGERVDERVVWVYLVQCLEALSALHALRVLHRDIKPANILLDKEGNAKLGDLNVSKCLDDETGEIHAVWGTLPYMAPEIWEGKPYGFASDLYSLGCTLFELTKLVPPFDGPTPLHLRRAVLKRQFQSDLATDTVYSHDLRHVILSRLLHHDPAQRLTADSLMQLPEVASRLELVRHKLPTDLPAALPLTPSSLLLKHLNTPIARNSSEVREEGKSLEGSPVQLEEGGA---------------DTTRGSTNEEAQGSASLTLGALPSLLPTLLPGPSYPPLSSAQALSPSASLPVSSSAPERSRETAH-----DHPRQACPLPPPFP 436

The following BLAST results are available for this feature:

BLAST of NO01G00260.1 vs.

BLAST of NO01G00260.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM28941.1	2.600e-154	68.22	protein kinase domain containing protein [Nannochl...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO01G00260	NO01G00260	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO01G00260.1	NO01G00260.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO01G00260.1.cds1	NO01G00260.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr1:43955..46168+
coding sequence from alignment at chr1:43955..46168+

mRNA sequence

>NO01G00260.1 ID=NO01G00260.1|Name=NO01G00260.1|organism=Nannochloropsis oceanica|type=mRNA|length=2214bp
ATGCAGCCCTTACAACGAAATCATCATACCACTTTACCGCTTACCACAGT
AATCTTGACGTGTGTAATCCACCCAAGCTCCTCCGCCCCCAAGGAGGGCC
TCAAGCTCAGTCGTATGGGAGACTCGACATCTGCCCCCTCCTCCTTCTCC
TCCTTGCCTTCCTTCCCCTCCTACCCCCCTTCTTCCTCTTTCACGACCAT
TCAAGACTTCCACGTCTTGGCCAAACTCGGTCTGGGTGCTTATGGAAGCG
TGTACCAAGTTGTGCGCAAGGCCGACCACCACACATACGCTATGAAGCGC
GTCAATCTTGATGGTCTGGATCAACGTGATCTGGCAATGGCTTTGAATGA
AATTCGGCTACTCGCCTCCTTTCGCCACCCGCGCATCATCCGCTGCTACG
AGACTTTCATGGACGGACCTACACACCTGTGCATTGTTATGGAGTACTGC
GGCTTCCAGGACCTGGCCCGCAAGATTCAGCGGTACCGGACGAGGGGGGA
GCGAGTGGACGAACGCGTGGTGTGGGTATACTTGGTGCAGTGCTTGGAGG
CCCTGTCAGCATTGCATGCCTTGCGTGTACTCCATCGTGACATCAAGCCC
GCGAACATTCTGCTGGACGAGGAGGGGAATGCCAAGCTGGGGGACATGAA
CGTGTCCAAGTCCCTGGACGACGAGACAGGCGAGGTGCAATCGGTCATGG
GTACGCTGCCCTACATGGCCCCTGAGATCTGGGAGGGCAAGCCATACGGA
TTCGCCGCCGATCTATACTCCCTCGGTTGCACGCTCTTCGAGCTCACGAC
CCTCGTACAGCCCTTCGATGGGCCCAACCCTCTTTACCTAAGGCGGGCCG
TGCTCAAGCGCCAGTTTCAGGCACGGCTGGACACGGATGACTTCTACTCT
CAGGAATTGCGAGACCTGATCCTCCTCCGCCTCCTACATCCTGATCCTGC
CCAGCGTCTCACCGCCGACAGCCTCATGCGGGTGCCCGAGGTAGCCTCTC
GGTTGGACTTGGTGCGGCACAAGCTCCCCAAGGACTTGCCCGCCTCCCTC
CCCCTCACCCCTGCTGCCTTGCTGATACATCATTTGAACAGCAATGGCGG
TAATAGCAGCAGCAGCGGTAGCAGCAATAGCAAAGAGGAAGAAGGTGTGG
ATACAGGCGCAGAAACACCAAGCAGCAGGAGGATCATTGTCACCGCCACT
AGCACCAACTACACCAGCAGCAGTAACAACAACAACAACGACAACGACAC
CACCGTGAACAGTCTGTCGCTGACGCTGGAAGAACTGCCTTTCCTCCTAC
CCCACCTCCTACCGGGGCCCTCTTACCCTACTCTTTCTCCTCCTCCTTCT
CCTCCTTCTCCCTCTGCCACACCGAACGTCAACAGAAGCAACAGCAGGAG
CAATAACAGCATTGACACTCCAAGCAATGCGACATTCCTCCCTTCTCCTC
TTCCGCCCTCCCTTTCCCTTTCCAGGCCTGAGGTGACGCGGGAAGACTCG
CTGACGGCCTTGCTCCGCTCGCCCTTCGCCACCTCCTCCTCCGGCACCAC
CAGCAGGACTACTATTGAGACAAAGCCGCCGGTGGGGGAGGGAGGAGGAG
ATGTGGTCACGACTCACCAGCGACACTGCAGGGAGGAAGGACAGACACTC
GTGCACTCTTTATCTTCTCCCGTGGCCTCTGCTCCCTGCTCCTCGTCGTC
CCCGGGAGCATCAGTCATGTCACCGCCCTCCGCAGCAGCGACGATGACCA
CCACCACCGACGGGGCAGCAGCGACAGCAGTCGCAGGCAAGCCCAGACAT
GGGGGCAAGCGCCCGAGGAAGAAACGGCCCGACTCCTTGTCTACCGCCAG
TATGACAACCGCGCCCGCCTCCTCCGCCTTGGAGAGCAGTGCCTCCCTCC
TGCATAGCCTCTCCCTCGATCAGACTCCAGACAATGTCTGCGAGGAAAGG
GAGGAAGGCGGGGAGGGAAATTCGAGGGAAAAGCTTAACAGCGAAGGGCA
AGTGCAATGGGAGGCCTTACCTACGCCGAATTCTTTCCCCCTCCCTCTCT
TGTCGCCCTGTCCCGCCAGCCCTCCCTTTGAGCAGCAGCTGATGGTCAGG
AGGGAGGGGGGAAAGGTTGAAGGAGGAGAGGGGGAGGAGGGAGGAGGAAA
TGAGGGGCTTATAAAGGGGGAGGAAAGAGAGGGGCTAGACGGATGTCTCA
CTGATAAAAAATAA

protein sequence of NO01G00260.1

>NO01G00260.1-protein ID=NO01G00260.1-protein|Name=NO01G00260.1|organism=Nannochloropsis oceanica|type=polypeptide|length=738bp
MQPLQRNHHTTLPLTTVILTCVIHPSSSAPKEGLKLSRMGDSTSAPSSFS
SLPSFPSYPPSSSFTTIQDFHVLAKLGLGAYGSVYQVVRKADHHTYAMKR
VNLDGLDQRDLAMALNEIRLLASFRHPRIIRCYETFMDGPTHLCIVMEYC
GFQDLARKIQRYRTRGERVDERVVWVYLVQCLEALSALHALRVLHRDIKP
ANILLDEEGNAKLGDMNVSKSLDDETGEVQSVMGTLPYMAPEIWEGKPYG
FAADLYSLGCTLFELTTLVQPFDGPNPLYLRRAVLKRQFQARLDTDDFYS
QELRDLILLRLLHPDPAQRLTADSLMRVPEVASRLDLVRHKLPKDLPASL
PLTPAALLIHHLNSNGGNSSSSGSSNSKEEEGVDTGAETPSSRRIIVTAT
STNYTSSSNNNNNDNDTTVNSLSLTLEELPFLLPHLLPGPSYPTLSPPPS
PPSPSATPNVNRSNSRSNNSIDTPSNATFLPSPLPPSLSLSRPEVTREDS
LTALLRSPFATSSSGTTSRTTIETKPPVGEGGGDVVTTHQRHCREEGQTL
VHSLSSPVASAPCSSSSPGASVMSPPSAAATMTTTTDGAAATAVAGKPRH
GGKRPRKKRPDSLSTASMTTAPASSALESSASLLHSLSLDQTPDNVCEER
EEGGEGNSREKLNSEGQVQWEALPTPNSFPLPLLSPCPASPPFEQQLMVR
REGGKVEGGEGEEGGGNEGLIKGEEREGLDGCLTDKK*

mRNA from alignment at chr1:43955..46168+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO01G00260.1 ID=NO01G00260.1|Name=NO01G00260.1|organism=Nannochloropsis oceanica|type=mRNA|length=2214bp|location=Sequence derived from alignment at chr1:43955..46168+ (Nannochloropsis oceanica)
ATGCAGCCCTTACAACGAAATCATCATACCACTTTACCGCTTACCACAGT
AATCTTGACGTGTGTAATCCACCCAAGCTCCTCCGCCCCCAAGGAGGGCC
TCAAGCTCAGTCGTATGGGAGACTCGACATCTGCCCCCTCCTCCTTCTCC
TCCTTGCCTTCCTTCCCCTCCTACCCCCCTTCTTCCTCTTTCACGACCAT
TCAAGACTTCCACGTCTTGGCCAAACTCGGTCTGGGTGCTTATGGAAGCG
TGTACCAAGTTGTGCGCAAGGCCGACCACCACACATACGCTATGAAGCGC
GTCAATCTTGATGGTCTGGATCAACGTGATCTGGCAATGGCTTTGAATGA
AATTCGGCTACTCGCCTCCTTTCGCCACCCGCGCATCATCCGCTGCTACG
AGACTTTCATGGACGGACCTACACACCTGTGCATTGTTATGGAGTACTGC
GGCTTCCAGGACCTGGCCCGCAAGATTCAGCGGTACCGGACGAGGGGGGA
GCGAGTGGACGAACGCGTGGTGTGGGTATACTTGGTGCAGTGCTTGGAGG
CCCTGTCAGCATTGCATGCCTTGCGTGTACTCCATCGTGACATCAAGCCC
GCGAACATTCTGCTGGACGAGGAGGGGAATGCCAAGCTGGGGGACATGAA
CGTGTCCAAGTCCCTGGACGACGAGACAGGCGAGGTGCAATCGGTCATGG
GTACGCTGCCCTACATGGCCCCTGAGATCTGGGAGGGCAAGCCATACGGA
TTCGCCGCCGATCTATACTCCCTCGGTTGCACGCTCTTCGAGCTCACGAC
CCTCGTACAGCCCTTCGATGGGCCCAACCCTCTTTACCTAAGGCGGGCCG
TGCTCAAGCGCCAGTTTCAGGCACGGCTGGACACGGATGACTTCTACTCT
CAGGAATTGCGAGACCTGATCCTCCTCCGCCTCCTACATCCTGATCCTGC
CCAGCGTCTCACCGCCGACAGCCTCATGCGGGTGCCCGAGGTAGCCTCTC
GGTTGGACTTGGTGCGGCACAAGCTCCCCAAGGACTTGCCCGCCTCCCTC
CCCCTCACCCCTGCTGCCTTGCTGATACATCATTTGAACAGCAATGGCGG
TAATAGCAGCAGCAGCGGTAGCAGCAATAGCAAAGAGGAAGAAGGTGTGG
ATACAGGCGCAGAAACACCAAGCAGCAGGAGGATCATTGTCACCGCCACT
AGCACCAACTACACCAGCAGCAGTAACAACAACAACAACGACAACGACAC
CACCGTGAACAGTCTGTCGCTGACGCTGGAAGAACTGCCTTTCCTCCTAC
CCCACCTCCTACCGGGGCCCTCTTACCCTACTCTTTCTCCTCCTCCTTCT
CCTCCTTCTCCCTCTGCCACACCGAACGTCAACAGAAGCAACAGCAGGAG
CAATAACAGCATTGACACTCCAAGCAATGCGACATTCCTCCCTTCTCCTC
TTCCGCCCTCCCTTTCCCTTTCCAGGCCTGAGGTGACGCGGGAAGACTCG
CTGACGGCCTTGCTCCGCTCGCCCTTCGCCACCTCCTCCTCCGGCACCAC
CAGCAGGACTACTATTGAGACAAAGCCGCCGGTGGGGGAGGGAGGAGGAG
ATGTGGTCACGACTCACCAGCGACACTGCAGGGAGGAAGGACAGACACTC
GTGCACTCTTTATCTTCTCCCGTGGCCTCTGCTCCCTGCTCCTCGTCGTC
CCCGGGAGCATCAGTCATGTCACCGCCCTCCGCAGCAGCGACGATGACCA
CCACCACCGACGGGGCAGCAGCGACAGCAGTCGCAGGCAAGCCCAGACAT
GGGGGCAAGCGCCCGAGGAAGAAACGGCCCGACTCCTTGTCTACCGCCAG
TATGACAACCGCGCCCGCCTCCTCCGCCTTGGAGAGCAGTGCCTCCCTCC
TGCATAGCCTCTCCCTCGATCAGACTCCAGACAATGTCTGCGAGGAAAGG
GAGGAAGGCGGGGAGGGAAATTCGAGGGAAAAGCTTAACAGCGAAGGGCA
AGTGCAATGGGAGGCCTTACCTACGCCGAATTCTTTCCCCCTCCCTCTCT
TGTCGCCCTGTCCCGCCAGCCCTCCCTTTGAGCAGCAGCTGATGGTCAGG
AGGGAGGGGGGAAAGGTTGAAGGAGGAGAGGGGGAGGAGGGAGGAGGAAA
TGAGGGGCTTATAAAGGGGGAGGAAAGAGAGGGGCTAGACGGATGTCTCA
CTGATAAAAAATAA

Coding sequence (CDS) from alignment at chr1:43955..46168+

>NO01G00260.1 ID=NO01G00260.1|Name=NO01G00260.1|organism=Nannochloropsis oceanica|type=CDS|length=2214bp|location=Sequence derived from alignment at chr1:43955..46168+ (Nannochloropsis oceanica)
ATGCAGCCCTTACAACGAAATCATCATACCACTTTACCGCTTACCACAGT
AATCTTGACGTGTGTAATCCACCCAAGCTCCTCCGCCCCCAAGGAGGGCC
TCAAGCTCAGTCGTATGGGAGACTCGACATCTGCCCCCTCCTCCTTCTCC
TCCTTGCCTTCCTTCCCCTCCTACCCCCCTTCTTCCTCTTTCACGACCAT
TCAAGACTTCCACGTCTTGGCCAAACTCGGTCTGGGTGCTTATGGAAGCG
TGTACCAAGTTGTGCGCAAGGCCGACCACCACACATACGCTATGAAGCGC
GTCAATCTTGATGGTCTGGATCAACGTGATCTGGCAATGGCTTTGAATGA
AATTCGGCTACTCGCCTCCTTTCGCCACCCGCGCATCATCCGCTGCTACG
AGACTTTCATGGACGGACCTACACACCTGTGCATTGTTATGGAGTACTGC
GGCTTCCAGGACCTGGCCCGCAAGATTCAGCGGTACCGGACGAGGGGGGA
GCGAGTGGACGAACGCGTGGTGTGGGTATACTTGGTGCAGTGCTTGGAGG
CCCTGTCAGCATTGCATGCCTTGCGTGTACTCCATCGTGACATCAAGCCC
GCGAACATTCTGCTGGACGAGGAGGGGAATGCCAAGCTGGGGGACATGAA
CGTGTCCAAGTCCCTGGACGACGAGACAGGCGAGGTGCAATCGGTCATGG
GTACGCTGCCCTACATGGCCCCTGAGATCTGGGAGGGCAAGCCATACGGA
TTCGCCGCCGATCTATACTCCCTCGGTTGCACGCTCTTCGAGCTCACGAC
CCTCGTACAGCCCTTCGATGGGCCCAACCCTCTTTACCTAAGGCGGGCCG
TGCTCAAGCGCCAGTTTCAGGCACGGCTGGACACGGATGACTTCTACTCT
CAGGAATTGCGAGACCTGATCCTCCTCCGCCTCCTACATCCTGATCCTGC
CCAGCGTCTCACCGCCGACAGCCTCATGCGGGTGCCCGAGGTAGCCTCTC
GGTTGGACTTGGTGCGGCACAAGCTCCCCAAGGACTTGCCCGCCTCCCTC
CCCCTCACCCCTGCTGCCTTGCTGATACATCATTTGAACAGCAATGGCGG
TAATAGCAGCAGCAGCGGTAGCAGCAATAGCAAAGAGGAAGAAGGTGTGG
ATACAGGCGCAGAAACACCAAGCAGCAGGAGGATCATTGTCACCGCCACT
AGCACCAACTACACCAGCAGCAGTAACAACAACAACAACGACAACGACAC
CACCGTGAACAGTCTGTCGCTGACGCTGGAAGAACTGCCTTTCCTCCTAC
CCCACCTCCTACCGGGGCCCTCTTACCCTACTCTTTCTCCTCCTCCTTCT
CCTCCTTCTCCCTCTGCCACACCGAACGTCAACAGAAGCAACAGCAGGAG
CAATAACAGCATTGACACTCCAAGCAATGCGACATTCCTCCCTTCTCCTC
TTCCGCCCTCCCTTTCCCTTTCCAGGCCTGAGGTGACGCGGGAAGACTCG
CTGACGGCCTTGCTCCGCTCGCCCTTCGCCACCTCCTCCTCCGGCACCAC
CAGCAGGACTACTATTGAGACAAAGCCGCCGGTGGGGGAGGGAGGAGGAG
ATGTGGTCACGACTCACCAGCGACACTGCAGGGAGGAAGGACAGACACTC
GTGCACTCTTTATCTTCTCCCGTGGCCTCTGCTCCCTGCTCCTCGTCGTC
CCCGGGAGCATCAGTCATGTCACCGCCCTCCGCAGCAGCGACGATGACCA
CCACCACCGACGGGGCAGCAGCGACAGCAGTCGCAGGCAAGCCCAGACAT
GGGGGCAAGCGCCCGAGGAAGAAACGGCCCGACTCCTTGTCTACCGCCAG
TATGACAACCGCGCCCGCCTCCTCCGCCTTGGAGAGCAGTGCCTCCCTCC
TGCATAGCCTCTCCCTCGATCAGACTCCAGACAATGTCTGCGAGGAAAGG
GAGGAAGGCGGGGAGGGAAATTCGAGGGAAAAGCTTAACAGCGAAGGGCA
AGTGCAATGGGAGGCCTTACCTACGCCGAATTCTTTCCCCCTCCCTCTCT
TGTCGCCCTGTCCCGCCAGCCCTCCCTTTGAGCAGCAGCTGATGGTCAGG
AGGGAGGGGGGAAAGGTTGAAGGAGGAGAGGGGGAGGAGGGAGGAGGAAA
TGAGGGGCTTATAAAGGGGGAGGAAAGAGAGGGGCTAGACGGATGTCTCA
CTGATAAAAAATAA

Synonyms

Publications